scRNA-seq火山图
简介
与传统的两组比较火山图不同,scRNA-seq火山图是多个cluster(vs 其他cluster)的比较。本图利用jitter方式在一张图上展示多个cluster的差异基因。X轴是不同的cluster(细胞簇),Y轴是avg_log2FC。也可以用于多个比较的bulk RNA-seq
数据说明
输入数据有4列:第1列是基因名;第2列是avg_log2FC;第3列是p/FDR值;第4列是cluster(细胞簇名)。默认标注每个cluster的avg_log2FC top10基因,或者待标注基因里有数据时,标注所指定的基因。
论文例子
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart
如何引用?
建议直接写网址。4400+篇
google学术,3700+篇
知网学术
正式引用:Tang D, Chen M, Huang X, Zhang G, Zeng L, Zhang G, Wu S, Wang Y.
SRplot: A free online platform for data visualization and graphing. PLoS One. 2023 Nov 9;18(11):e0294236. doi: 10.1371/journal.pone.0294236. PMID: 37943830.
方法章节:Heatmap was plotted by https://www.bioinformatics.com.cn (last accessed on 10 Oct 2024), an online platform for data analysis and visualization.
致谢章节:We thank Mingjie Chen (Shanghai NewCore Biotechnology Co., Ltd.) for providing data analysis and visualization support.